What was the solution? I'm trying to mount all my configs and roms and everything on an external usb so the 'OS' just runs from the card and nothing else.
Would I be able to edit things in folders that are currently denied because of permissions using this method?
I'm still not very happy that I can't edit the NstDatabase.xml file for Nestopia or all of the hoops you have to jump through to change control configurations. Would be nice if this method was a workaround for that.